CSCE 496/896 (Fall 2002) Project List


  1. Cory Strope and Andrew Breiner
    Suffix tree-based database searches
  2. Mamta Bajaj
    Multiple alignments of G-protein coupled receptors
  3. Adam Cook
    Simplifying Amino Acid Alphabets by Means of a Branch and Bound Algorithm and Substitution Matrices
  4. Skanth Ganesan
    Searching for new thioredoxin-fold proteins
  5. Justin Cramer
    HMMs in gene finding
  6. Pooja Khati
    Comparing SAM and HMMER on GPCR proteins
  7. Steven Cox
    Protein structure prediction
  8. Jingyi Yang and Chen Xia
    Whole genome alignment
  9. Andrei Istomin
    Evaluation of several distant homology detection algorithms
  10. Zhaohui Sun and Chao Chen
    Applying suffix trees and BASS trees to database search
  11. Jason Lee
    Computational Biology Approach to Discover Cytochrome b-561 Gene Arabidopsis Thaliana
  12. Padmapriya Ashokkumar
    Implementation of dynamic programming and center star algorithms for multiple alignments
  13. Elena Doukhanina
    Characterization of BAG proteins in Arabidopsis thaliana
  14. Sarathkumar Polireddy and Subhani Shaik
    Modeling protein super families with low primary sequence conservation using new Dirichlet prior distributions over remapped alphabets
  15. Praveen Guddeti
    Modeling protein super families with low primary sequence conservation using new Dirichlet prior distributions over primary sequence

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