CSCE 496/896 (Fall 2002) Project List
- Cory Strope and Andrew Breiner
Suffix tree-based database searches
- Mamta Bajaj
Multiple alignments of G-protein coupled receptors
- Adam Cook
Simplifying Amino Acid Alphabets by Means of a Branch and Bound
Algorithm and Substitution Matrices
- Skanth Ganesan
Searching for new thioredoxin-fold proteins
- Justin Cramer
HMMs in gene finding
- Pooja Khati
Comparing SAM and HMMER on GPCR proteins
- Steven Cox
Protein structure prediction
- Jingyi Yang and Chen Xia
Whole genome alignment
- Andrei Istomin
Evaluation of several distant homology detection algorithms
- Zhaohui Sun and Chao Chen
Applying suffix trees and BASS trees to database search
- Jason Lee
Computational Biology Approach to Discover Cytochrome b-561 Gene Arabidopsis
Thaliana
- Padmapriya Ashokkumar
Implementation of dynamic programming and center star algorithms for multiple
alignments
- Elena Doukhanina
Characterization of BAG proteins in Arabidopsis thaliana
- Sarathkumar Polireddy and Subhani Shaik
Modeling protein super families with low primary sequence conservation using
new Dirichlet prior distributions over remapped alphabets
- Praveen Guddeti
Modeling protein super families with low primary sequence conservation using
new Dirichlet prior distributions over primary sequence
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