Bioinformatics Hotlist

People

• Patricia Babbitt
• Pierre Baldi
• Kristin P. Bennett [SVMs, bioinformatics]
• Andrew K. Benson
• Piotr Berman
• Paul Blum
• Peter Clote [author of Computational Molecular Biology: An Introduction]
• Christian Anders Cumbaa
• Richard Durbin
• Sean Eddy: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
• Vadim Gladyshev
• Goodman
• John J. Grefenstette
• Vasant Honavar
• David Haussler
• Xiaoqiu Huang [CAP3 sequence assembler]
• David B. Jaffe, teaching Math 939: Algorithms in biological sequence analysis in Spring '00 [slides]
• Kevin Karplus
• Anders Krogh: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
• Michael Brown
• Michael Levitt
• Michal Linial
• Graeme Mitchison
• Etsuko Moriyama
• C. David Page [inductive logic programming/drug discovery]
• William R. Pearson
• Ernest F. Retzel
• Steven Salzberg [Johns Hopkins University] [TIGR]
• Ram Samudrala
• Ron Shamir
• Jude W. Shavlik
• Cory Strope
• George S. Michaels
• Stephen H. Muggleton [ILP in bioinformatics]
• Navachat Dan Tongvichit
• Suresh Venkatasubramanian [computational geometry, drug design]
• Michael S. Waterman
• Pavel A. Pevzner

Institutions

• Bioinformatics at UNL
• National Center for Biotechnology Information (NCBI)
• The Institute for Genomic Research (TIGR)
• The University of Washington Genome Center [Phred, Phrap]
• UCSC Bioinformatics [Phred, Phrap]
• Celera
• Center for Biological Sequence Analysis, The Technical University of Denmark
• DIMACS 2000-2003 Special Focus on Computational Molecular Biology
• The International Society for Computational Biology
• University of Nebraska Center For Biotechnology
• University of Nebraska-Lincoln Department of Food Science and Technology
• Nebraska Bioinformatics Infrastructure
• University of Nebraska-Lincoln School of Biological Sciences
• Washington University Institute for Biomedical Computing
• Bioinformatics at the University of Michigan
• Computational Biology in the UW-Madison CS Dept
• Dept. of Biostatistics and Medical Informatics/UW Medical School
• USC Center for Computational and Experimental Genomics
• U. of Pennsylvania Computational Biology and Informatics Laboratory
• Stanford Program in Molecular and Genetic Medicine
• U. of Illinois Center for Biophysics and Computational Biology
• The Krasnow Institute at George Mason University
• Computational Sciences and Informatics
• EMBL: European Molecular Biology Laboratory
  • EMBL's PredictProtein Server
• European Bioinformatics Institute (EBI)
• University of Missouri Bioinformatics Group
• The Center for Microbial Ecology
• Universitat Mannheim Institute of Computer Science/Biocomputing Group
• Biocomputing and Molecular Modeling at the University of Zurich
• European Molecular Biology Network
• InfoBioGen
• Weizmann Institute of Science Department of Biological Services
• The Microarray Group Homepage at Manchester Bioinformatics
• Megabase Research Products
• Integrated Genomics, Inc.

Funding Agencies

• NCRR
• NIH
• NSF
• Burroughs Wellcome Fund

Journals

• List of journals
• IEEE Transactions on Computational Biology and Bioinformatics
• Journal of Computational Biology
• Journal of Bioinformatics and Computational Biology
• Nucleic Acids Research
• Proteins: Structure, Function, and Genetics
• Journal of Computational Chemistry
• Journal of Molecular Biology
• Protein Engineering
• Proceedings of the National Academy of Sciences of the United States of America [back issues] [current issues]
• Bioinformatics
• Online Journal of Bioinformatics
• Applied Bioinformatics

Conferences

• List of conferences
• RECOMB
  • RECOMB 2004
  • RECOMB 2001
  • RECOMB 2000
  • RECOMB 99
  • RECOMB 98
• ISMB: International Conf. on Intelligent Systems for Molecular Biology
  • ISMB 2003
  • ISMB 2002
  • ISMB 2000
  • ISMB 99
  • ISMB 98
  • ISMB 97
  • ISMB 96
  • ISMB 94
• CBGI: Computational Biology and Genome Informatics
  • CBGI 2002
  • CBGI 2001
• PSB: Pacific Symposium on Biocomputing
  • PSB 2001
  • PSB 2000
  • PSB 99
  • PSB 98
  • PSB 97
  • PSB 96
• IEEE Computer Society Bioinformatics Conference 2002
• Nebraska EPSCoR conference, April 4-5, 2002
• Mathematical Biology Workshop at UNL's Math Dept., May 17-18, 2002
• Statistics Day and Workshop on Mapping Genes at UNL's Math Dept.
• First Virtual Conference in Genomics and Bioinformatics
• International Conference on Bioinformatics (InCoB2002)
• Life Sciences 2001
• ADVANCED COMPUTING IN BIOMEDICINE 2001
• ISCB's Conference List

Analysis Hardware and Software and Databases

• MODELLER (comparative modeling of protein three-dimensional structures )
• SAM (Sequence Alignment and Modeling System)
• HMMER [Profile hidden Markov models for biological sequence analysis]
• Net-ID, Inc. [HMM and NN software for bioinformatics applications]
• PREDATOR [protein secondary structure prediction]
• National Center for Biotechnology Information (NCBI)
• MDL Information Systems, Inc. [Chime, ISIS/Draw]
• Pedro's BioMolecular Research Tools
• PatScan protein sequence searcher
• Weizmann Bioinformatics FTP server [databases, software]
• LI-COR
• Sequence and Structural Databases
• GrainGenes [small grains and sugarcane]
• Visualization tools
• Phylogenetics Databases and Information
• LI-COR Biotechnology Division
• Genetics Computer Group

BioComputing

• Biocomputing at Whitehead
• W. M. Keck Center for Molecular Electronics

Misc.

• UNL Bioinformatics Club
• ACM SIGBIO
• BioInformer Newsletter
• Source Code for the book Computational Molecular Biology: An Introduction

Last modified 28 March 2006.