PROFESS

Release 1.1
(2009-11-06)







StatsDatabase Statistics

Function

• COG Clusters 9,725
• Enzyme Classes 5,093
• GO Terms 27,606
• Ligands 9,330
• PFAM 10,340
• Protein Interactions 11,422

Evolution

• Essential Genes 0

Structure

• CATH Classes 2,178
• Protein Structures 56,699
• Structure Comparisons 59,520

Sequence

• Protein Sequences 292,953
• Sequence Comparisons 95,021
Last update: 2009-11-06

TeamDevelopment Team

Contact:    Thomas Triplet


Database Design and Programming
• Peter Revesz
• Thomas Triplet


Genomics
• Mark A. Griep
• Robert Powers
• Matthew D. Shortridge

About PROFESS




Contact | Acknowledgements | Development Team



Contact Information



Please send your comments, questions or suggestions regarding PROFESS to Thomas Triplet or use the form below. For inquiries regarding a particular database, please contact the database authors directly.




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Acknowledgements



This work was supported by grants from the Nebraska Tobacco Settlement Biomedical Research Development Funds, a Nebraska Research Council Interdisciplinary Research Grant, a Milton E. Mohr Fellowship for Biotechnology, and a Fulbright Scholarship. The research was performed at the University of Nebraska-Lincoln in facilities renovated with support from NIH (RR015468-01).



Development Team



Thomas Triplet       link   link


Ph.D. student in the Computer Science and Engineering Department at the University of Nebraska-Lincoln.
Expertise in bioinformatics, data integration, database design, machine learning and software engineering.



Matthew Shortridge       link   link


Ph.D. student in the Chemistry Department at the University of Nebraska-Lincoln.
Expertise in biochemical development, structural biology, bioinformatics and antibiotic resistance.



Dr. Mark Griep       link   link


Associate Professor in the Chemistry Department at the University of Nebraska-Lincoln.
Expertise in antibiotics that inhibit bacterial primase and helicase, fluorescence resonance energy transfer (FRET), mass spectrometric peptide mapping, stopped-flow kinetics, computer-aided drug screening and high-throughput screening of compound libraries.



Dr. Robert Powers       link   link


Associate Professor in the Chemistry Department at the University of Nebraska-Lincoln.
Expertise in bioinformatics, NMR spectroscopy, mass spectroscopy, metabolomics, molecular modeling and structural biology to assign a biological function to novel proteins.



Dr. Peter Revesz       link   link


Professor in the Computer Science and Engineering Department at the University of Nebraska-Lincoln.
Expertise in bioinformatics, geoinformatics and various types of databases ranging from constraint databases (MLPQ system), genome databases, spatial databases and temporal databases.